the work
Professional work, hosted elsewhere and linked out.
A platform for putting human experts in the loop on AI output: review LLM-suggested matches and mappings, build calibrated ground truth, and measure inter-rater reliability. The work app the others below feed into.
A Streamlit explorer over the Polygenic Score Catalog: browse scores, traits, and provenance without wrangling the raw files.
The review-and-linking interface over BioMapper2: run entity-mapping campaigns and curate the matches by hand.
A FastAPI service that maps biological entities across the namespaces that refuse to agree (HMDB, UniProt, ChEBI), without pretending the mapping is clean. Browsable at /api/v1/docs.
Ask a biomedical knowledge graph questions in plain language and get answers traced back through multi-omics relationships. A React front end over a FastAPI backend (KRAKEN).
Measuring what AI agents actually do on bio tasks (AstaBench, BiomniBench) instead of trusting the demo reel.
the rabbit holes
Real signals from around Dyes Inlet: a BirdWeather station in my yard, plus the nearest NOAA tide gauge. No curation.
A BirdNET station in my backyard (PUC-2078) listening to Dyes Inlet. Live detections, no curation — whatever actually showed up.
The moon sets the biggest tides. Here's the local gauge in 3D, plus the winter day the moon can't explain.
The Pacific Northwest bird cam, between homes at the moment. The live feed comes back soon, but the channel already has a back catalog worth a scroll.
Sampling what's actually floating in the backyard air — the part of the microbiome nobody photographs.
The vault, the agents, and the hardware tiers that let one person run all of this.
A Raspberry Pi 5 (lamppost) speed-tests two uplinks in parallel, Astound on one NIC and T-Mobile 5G on the other, to settle which ISP actually delivers. A month of data said Astound, once a new coax fixed it: ~940 Mbps at ~12ms.
The Obsidian vault and the agents that run my life out of it — the 'AI actually accomplishes all of this' thesis, instrumented.
The actual hardware stack — from the Linode that serves this page down to the boxes in the closet — and why each tier exists.
